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Monica Rainer
gofio
Commits
1aa397b8
Commit
1aa397b8
authored
Feb 13, 2018
by
Monica Rainer
Browse files
Change headers of ms1d files and IMANAME keywords
parent
249b6a9b
Changes
2
Hide whitespace changes
Inline
Side-by-side
gofio/drslib/nodding.py
View file @
1aa397b8
...
...
@@ -138,7 +138,7 @@ class GBNodding():
h
[
mjdB
]
=
(
nodB
.
header
[
CONFIG
[
'KEYS'
][
'MJD'
]],
CONFIG
[
'SPEC_MJD'
][
1
])
nodAB
.
header
[
CONFIG
[
'KEYS'
][
'FILENAME'
]]
=
ABnome
#
nodAB.header[CONFIG['KEYS']['IMANAME']] = ABnome
nodAB
.
header
[
CONFIG
[
'KEYS'
][
'IMANAME'
]]
=
ABnome
ABtmpnome
=
os
.
path
.
join
(
CONFIG
[
'TMP_DIR'
],
ABnome
)
...
...
@@ -462,6 +462,7 @@ class GBNodding():
heaspe
=
fits
.
Header
(
hea_ima
)
heaspe
[
CONFIG
[
'KEYS'
][
'FILENAME'
]]
=
calname
heaspe
[
CONFIG
[
'KEYS'
][
'IMANAME'
]]
=
calname
drs_mjd
=
float
(
heaspe
[
CONFIG
[
'KEYS'
][
'MJD'
]])
+
(
float
(
heaspe
[
CONFIG
[
'KEYS'
][
'EXPTIME'
]])
/
(
2
*
86400
))
heaspe
[
CONFIG
[
'DRS_MJD'
][
0
]]
=
(
drs_mjd
,
CONFIG
[
'DRS_MJD'
][
1
])
...
...
@@ -520,10 +521,14 @@ class GBNodding():
c3
=
fits
.
Column
(
name
=
'FLUX'
,
format
=
''
.
join
((
str
(
CONFIG
[
'YCCD'
]),
'D'
)),
array
=
optSpectrum
)
c4
=
fits
.
Column
(
name
=
'SNR'
,
format
=
''
.
join
((
str
(
CONFIG
[
'YCCD'
]),
'D'
)),
array
=
snr
)
tbhdu
=
fits
.
BinTableHDU
.
from_columns
([
c1
,
c2
,
c3
,
c4
],
header
=
heaspe
)
#tbhdu = fits.BinTableHDU.from_columns([c1, c2, c3, c4],header=heaspe)
tbhdu
=
fits
.
BinTableHDU
.
from_columns
([
c1
,
c2
,
c3
,
c4
])
prihdu
=
fits
.
PrimaryHDU
(
data
=
None
,
header
=
heaspe
)
hdulist
=
fits
.
HDUList
([
prihdu
,
tbhdu
])
calname
=
os
.
path
.
join
(
CONFIG
[
'RED_DIR'
],
calname
)
tbhdu
.
writeto
(
calname
,
clobber
=
True
)
#tbhdu.writeto(calname,clobber=True)
hdulist
.
writeto
(
calname
,
clobber
=
True
)
#t1 = time.time()
...
...
@@ -536,6 +541,7 @@ class GBNodding():
#s1d = varie.create_s1d(optSpectrum,snr,heaspe)
s1d
,
startval
=
varie
.
create_s1d
(
optSpectrum
,
heaspe
)
heaspe
[
CONFIG
[
'KEYS'
][
'FILENAME'
]]
=
calname1d
heaspe
[
CONFIG
[
'KEYS'
][
'IMANAME'
]]
=
calname1d
heaspe
[
'CRPIX1'
]
=
(
1.
,
'Reference pixel'
)
heaspe
[
'CRVAL1'
]
=
(
startval
,
'Coordinates at reference pixel'
)
heaspe
[
'CDELT1'
]
=
(
CONFIG
[
'S1D_STEP'
],
'Coordinates increment per pixel'
)
...
...
@@ -590,18 +596,15 @@ class GBNodding():
acal
=
fits
.
open
(
acalib
)
#afluxes = acal[0].data
#awaves = acal[0].header
#roneff = math.sqrt(2)*acal[0].header[CONFIG['RON_EFF'][0]]
#gaineff = 2*acal[0].header[CONFIG['GAIN_EFF'][0]]
adata
=
acal
[
1
].
data
#print adata.shape
afluxes
=
adata
.
field
(
2
)
#print afluxes
#print afluxes.shape
awaves
=
acal
[
1
].
header
roneff
=
math
.
sqrt
(
2
)
*
acal
[
1
].
header
[
CONFIG
[
'RON_EFF'
][
0
]]
gaineff
=
2
*
acal
[
1
].
header
[
CONFIG
[
'GAIN_EFF'
][
0
]]
#awaves = acal[1].header
abhea
=
acal
[
0
].
header
#roneff = math.sqrt(2)*acal[1].header[CONFIG['RON_EFF'][0]]
#gaineff = 2*acal[1].header[CONFIG['GAIN_EFF'][0]]
roneff
=
math
.
sqrt
(
2
)
*
abhea
[
CONFIG
[
'RON_EFF'
][
0
]]
gaineff
=
2
*
abhea
[
CONFIG
[
'GAIN_EFF'
][
0
]]
bcal
=
fits
.
open
(
bcalib
)
...
...
@@ -609,14 +612,16 @@ class GBNodding():
#bwaves = bcal[0].header
bdata
=
bcal
[
1
].
data
bfluxes
=
bdata
.
field
(
2
)
bwaves
=
bcal
[
1
].
header
#bwaves = bcal[1].header
bwaves
=
bcal
[
0
].
header
abcalib
=
np
.
zeros
((
CONFIG
[
'N_ORD'
],
CONFIG
[
'YCCD'
]))
snr
=
np
.
zeros
((
CONFIG
[
'N_ORD'
],
CONFIG
[
'YCCD'
]))
for
o
in
xrange
(
CONFIG
[
'N_ORD'
]):
bshift
=
varie
.
rebin
(
awaves
,
bfluxes
[
o
],
bwaves
,
o
)
#bshift = varie.rebin(awaves,bfluxes[o],bwaves,o)
bshift
=
varie
.
rebin
(
abhea
,
bfluxes
[
o
],
bwaves
,
o
)
abcalib
[
o
]
=
(
afluxes
[
o
]
+
bshift
)
/
2.0
#snr.append(max(np.mean(abcalib[o][1000:1050])/np.std(abcalib[o][1000:1050]),0))
with
np
.
errstate
(
divide
=
'ignore'
,
invalid
=
'ignore'
):
...
...
@@ -626,7 +631,7 @@ class GBNodding():
abcalib
=
np
.
asarray
(
abcalib
,
dtype
=
'float32'
)
#abhea = acal[0].header
abhea
=
acal
[
1
].
header
#
abhea = acal[1].header
abhea
[
CONFIG
[
'RON_EFF'
][
0
]]
=
(
roneff
,
CONFIG
[
'RON_EFF'
][
1
])
abhea
[
CONFIG
[
'GAIN_EFF'
][
0
]]
=
(
gaineff
,
CONFIG
[
'GAIN_EFF'
][
1
])
#abhea[CONFIG['TEXP_EFF'][0]] = (,CONFIG['TEXP_EFF'][1])
...
...
@@ -658,13 +663,15 @@ class GBNodding():
try
:
#am_a = acal[0].header[CONFIG['AIRMASS'][0]]
#am_b = bcal[0].header[CONFIG['AIRMASS'][0]]
am_a
=
acal
[
1
].
header
[
CONFIG
[
'AIRMASS'
][
0
]]
am_b
=
bcal
[
1
].
header
[
CONFIG
[
'AIRMASS'
][
0
]]
#am_a = acal[1].header[CONFIG['AIRMASS'][0]]
#am_b = bcal[1].header[CONFIG['AIRMASS'][0]]
am_a
=
abhea
[
CONFIG
[
'AIRMASS'
][
0
]]
am_b
=
bwaves
[
CONFIG
[
'AIRMASS'
][
0
]]
except
:
#am_a = acal[0].header[CONFIG['KEYS']['AM']]
#am_b = bcal[0].header[CONFIG['KEYS']['AM']]
am_a
=
a
cal
[
1
].
header
[
CONFIG
[
'KEYS'
][
'AM'
]]
am_b
=
b
cal
[
1
].
header
[
CONFIG
[
'KEYS'
][
'AM'
]]
am_a
=
a
bhea
[
CONFIG
[
'KEYS'
][
'AM'
]]
am_b
=
b
waves
[
CONFIG
[
'KEYS'
][
'AM'
]]
am
=
(
am_a
+
am_b
)
/
2.0
...
...
@@ -705,9 +712,13 @@ class GBNodding():
c3
=
fits
.
Column
(
name
=
'FLUX'
,
format
=
''
.
join
((
str
(
CONFIG
[
'YCCD'
]),
'D'
)),
array
=
abcalib
)
c4
=
fits
.
Column
(
name
=
'SNR'
,
format
=
''
.
join
((
str
(
CONFIG
[
'YCCD'
]),
'D'
)),
array
=
snr
)
tbhdu
=
fits
.
BinTableHDU
.
from_columns
([
c1
,
c2
,
c3
,
c4
],
header
=
heaspe
)
#tbhdu = fits.BinTableHDU.from_columns([c1, c2, c3, c4],header=heaspe)
tbhdu
=
fits
.
BinTableHDU
.
from_columns
([
c1
,
c2
,
c3
,
c4
])
prihdu
=
fits
.
PrimaryHDU
(
data
=
None
,
header
=
heaspe
)
hdulist
=
fits
.
HDUList
([
prihdu
,
tbhdu
])
tbhdu
.
writeto
(
abnome
,
clobber
=
True
)
#tbhdu.writeto(abnome,clobber=True)
hdulist
.
writeto
(
abnome
,
clobber
=
True
)
try
:
obj_name
=
heaspe
[
CONFIG
[
'KEYS'
][
'OBJECT'
]]
...
...
@@ -765,6 +776,7 @@ class GBNodding():
ABnome
=
str
(
os
.
path
.
basename
(
self
.
group
[
'noddings'
][
0
])).
replace
(
'_AB.fits'
,
'_ABgrp.fits'
)
nodA
.
header
[
CONFIG
[
'KEYS'
][
'FILENAME'
]]
=
ABnome
nodA
.
header
[
CONFIG
[
'KEYS'
][
'IMANAME'
]]
=
ABnome
nodA
.
header
[
CONFIG
[
'GAIN_EFF'
][
0
]]
=
(
len
(
self
.
group
[
'noddings'
])
*
headers
[
0
][
CONFIG
[
'GAIN_EFF'
][
0
]],
CONFIG
[
'GAIN_EFF'
][
1
])
nodA
.
header
[
CONFIG
[
'RON_EFF'
][
0
]]
=
(
headers
[
0
][
CONFIG
[
'RON_EFF'
][
0
]]
*
math
.
sqrt
(
len
(
self
.
group
[
'noddings'
])),
CONFIG
[
'RON_EFF'
][
1
])
...
...
@@ -802,8 +814,10 @@ class GBNodding():
heaB
=
nodA
.
header
heaA
[
CONFIG
[
'KEYS'
][
'SLIT'
]]
=
CONFIG
[
'A'
]
heaA
[
CONFIG
[
'KEYS'
][
'FILENAME'
]]
=
heaA
[
''
.
join
((
CONFIG
[
'SPEC_USED'
][
0
],
'1'
,
'A'
))]
heaA
[
CONFIG
[
'KEYS'
][
'IMANAME'
]]
=
heaA
[
''
.
join
((
CONFIG
[
'SPEC_USED'
][
0
],
'1'
,
'A'
))]
heaB
[
CONFIG
[
'KEYS'
][
'SLIT'
]]
=
CONFIG
[
'B'
]
heaB
[
CONFIG
[
'KEYS'
][
'FILENAME'
]]
=
heaA
[
''
.
join
((
CONFIG
[
'SPEC_USED'
][
0
],
'1'
,
'B'
))]
heaB
[
CONFIG
[
'KEYS'
][
'IMANAME'
]]
=
heaA
[
''
.
join
((
CONFIG
[
'SPEC_USED'
][
0
],
'1'
,
'B'
))]
Atmpnome
=
os
.
path
.
join
(
CONFIG
[
'TMP_DIR'
],
ABnome
)
...
...
gofio/drslib/stare.py
View file @
1aa397b8
...
...
@@ -559,6 +559,8 @@ class GBStare():
#calname1d = redname.replace('.fits','_s1d.fits')
heaspe
=
fits
.
Header
(
imstr
.
header
)
heaspe
[
CONFIG
[
'KEYS'
][
'FILENAME'
]]
=
str
(
os
.
path
.
basename
(
calname
))
heaspe
[
CONFIG
[
'KEYS'
][
'IMANAME'
]]
=
str
(
os
.
path
.
basename
(
calname
))
try
:
heaspe
[
CONFIG
[
'MASTERFLAT'
][
0
]]
=
(
os
.
path
.
basename
(
masterflat
),
CONFIG
[
'MASTERFLAT'
][
1
])
...
...
@@ -613,16 +615,22 @@ class GBStare():
c3
=
fits
.
Column
(
name
=
'FLUX'
,
format
=
''
.
join
((
str
(
CONFIG
[
'YCCD'
]),
'D'
)),
array
=
optSpectrum
)
c4
=
fits
.
Column
(
name
=
'SNR'
,
format
=
''
.
join
((
str
(
CONFIG
[
'YCCD'
]),
'D'
)),
array
=
snr
)
tbhdu
=
fits
.
BinTableHDU
.
from_columns
([
c1
,
c2
,
c3
,
c4
],
header
=
heaspe
)
#tbhdu = fits.BinTableHDU.from_columns([c1, c2, c3, c4],header=heaspe)
tbhdu
=
fits
.
BinTableHDU
.
from_columns
([
c1
,
c2
,
c3
,
c4
])
prihdu
=
fits
.
PrimaryHDU
(
data
=
None
,
header
=
heaspe
)
hdulist
=
fits
.
HDUList
([
prihdu
,
tbhdu
])
calname
=
os
.
path
.
join
(
CONFIG
[
'RED_DIR'
],
calname
)
tbhdu
.
writeto
(
calname
,
clobber
=
True
)
#tbhdu.writeto(calname,clobber=True)
hdulist
.
writeto
(
calname
,
clobber
=
True
)
try
:
obj_name
=
heaspe
[
CONFIG
[
'KEYS'
][
'OBJECT'
]]
except
:
obj_name
=
'NONE'
if
CONFIG
[
'S1D'
]:
heaspe
[
CONFIG
[
'KEYS'
][
'FILENAME'
]]
=
str
(
os
.
path
.
basename
(
calname1d
))
heaspe
[
CONFIG
[
'KEYS'
][
'IMANAME'
]]
=
str
(
os
.
path
.
basename
(
calname1d
))
#s1d = varie.create_s1d(optSpectrum,snr,heaspe)
s1d
,
startval
=
varie
.
create_s1d
(
optSpectrum
,
heaspe
)
heaspe
[
'CRPIX1'
]
=
(
1.
,
'Reference pixel'
)
...
...
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