Add docopt argument all_calib

gofio/drslib/gofio.py

@@ -41,6 +41,12 @@ def gofio_init(docopt_args):
             CONFIG['MASK_C'] = os.path.join(CONFIG['RES_DIR'], maskc)
 
     if docopt_args['<date>']:
+        if docopt_args['--all_calib']:
+            docopt_args['--dark'] = True
+            docopt_args['--flat'] = True
+            docopt_args['--une'] = True
+            docopt_args['--fp'] = True
+
         CONFIG['DATE'] = docopt_args['<date>']
         CONFIG['OFFLINE'] = True
         CONFIG['RAW_DIR'] = os.path.join(CONFIG['BASE_RAW'],CONFIG['DATE'])

gofio/drslib/varie.py

@@ -29,7 +29,7 @@ import math
 import warnings
 import string, random
 
-#import matplotlib.pyplot as plt
+import matplotlib.pyplot as plt
 #from scipy import optimize, interpolate, signal
 from scipy import optimize, interpolate
 
@@ -255,6 +255,9 @@ def optExtract(data,gain,ron,slit_pos,ordine):
     profile[profile==-np.inf] = 0
     profile = np.nan_to_num(profile)
 
+    #plt.plot(profile[x1:x2])
+    #plt.show()
+
     # update variance
     variance = var(StdFlux*profile)
 
@@ -315,12 +318,13 @@ def optExtract(data,gain,ron,slit_pos,ordine):
     profile[profile==-np.inf] = 0
     profile = np.nan_to_num(profile)
 
+    #plt.plot(profile[x1:x2])
+    #plt.show()
+
     #plt.plot(profile)
     #plt.plot(fitprofile)
     #plt.show()
 
-
-
     #t4 = time.time()
     #print 'Profile optimization order %s: %s ms' %  (str(ordine+32),str((t4-t3)*1000))
 
@@ -406,6 +410,8 @@ def optExtract(data,gain,ron,slit_pos,ordine):
     #t6 = time.time()
     #print 'Cosmic removal order %s: %s ms' %  (str(ordine+32),str((t6-t5)*1000))
 
+    #plt.plot(profile[x1:x2])
+    #plt.show()
 
     #plt.plot(StdFlux)
     #plt.plot(OptFlux)